Microbiology ميكروبيولوژي

Microbiology  ميكروبيولوژي دي ميكروبيولوژي صفحي ته خه راغلاست

12/02/2025
12/02/2025

Beautiful R-type colonies of Bacillus subtilis on ChromAgar.

Types of infections produced by Bacillus subtilis:

1. Ocular infections: Can cause conjunctivitis and keratitis, especially following ocular trauma or using contaminated contact lenses.
2. Skin and soft tissue infections: Rarely, Bacillus subtilis can cause skin infections such as folliculitis, cellulitis, or abscesses, particularly in individuals with skin injuries or post-surgical wounds.
3. Respiratory tract infections: Pulmonary infections or bronchopneumonia can occur, usually in patients with severe immunodeficiencies.
4. Gastrointestinal infections: Though very rare, Bacillus subtilis can cause food poisoning if food is contaminated.
5. Systemic infections: In extremely rare and severe cases, it can lead to bacteremia or sepsis, especially in patients with severe immunosuppression or those with implanted medical devices (catheters, prostheses).

12/02/2025

Agar Well Diffusion Method....

i) The agar well diffusion method is widely used to evaluate the antimicrobial activity of plants or microbial extracts.
ii) Similarly to the procedure used in the disk-diffusion method, the agar plate surface is inoculated by spreading a volume of the microbial inoculum over the entire agar surface.
iii) Then, a hole with a diameter of 6 to 8 mm is punched aseptically with a sterile cork borer or a tip, and a volume (20–100 µL) of the antimicrobial agent or extract solution at the desired concentration is introduced into the well.
iv) Then, agar plates are incubated under suitable conditions depending upon the test microorganism. The antimicrobial agent diffuses in the agar medium and inhibits the growth of the microbial strain tested.

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12/02/2025

معرفی رشته میکروبیولوژی:

علم ميكروبيولوژي كه گرايشي ازعلم زيست شناسي است ,به بررسي و مطالعه ي ميكروارگانيسم ها مي پردازد .دراين علم ارتباط ميكروارگانيسم ها با خودشان و هم چنين با موجودات عالي ترمانند انسان,حيوانات وگياهان مورد بررسي قرارمي گيرد.گفتني است كه علم ميكروبيولوژي گرايش هاي مختلفي دارد كه عبارت انداز :

1.گرايش پزشكي

دراين گرايش ميكروب هايي كه براي انسان بيماري زا هستند وچگونگي فعاليت آنها بررسي مي شود .البته اين گرايش قسمت كوچكي ازعلم ميكروبيولوژي را به خود اختصاص مي دهد,چون ازميان ميكروب هاي شناخته شده فقط حدود 170نوع ميكروب,بيماري زاهستند وبقيه ي آنها كه تا كنون شناخته شده اند ,ميكروب هاي مفيدند.

2.ميكروبيولوژي غذايي

بسياري ازمواد غذايي مثل ماست ياپنير به ياري ميكروب ها توليد مي شوند .

3.ميكروبيولوژي صنعتي

دراين گرايش ازميكروب هاي مفيد براي توليد مواد صنعتي مانند اسيدهاوكمپوست ميكروبي (تهيه كود به ياري مواد زايد وزباله ها)استفاده مي شود.هم چنين ازميكروب ها دررفع آلودگي هاي محيط زيست استفاده مي شود.رشته ي ميكروبيولوژي كه با ميكروارگانيسم ها (موجودات ريزذره بيني )سروكاردارد,دوجنبه ي مهم دارد .يكي مبارزه با ميكروارگانيسم هاي خطرناك وبيماري زاكه حیات­ انسان ها,حيوانات وگياهان رابه خطر مي اندازند و ميكروبيولوژيست با شناسايي روش ومسيرايجاد بيماري ها مي تواند اين مسيررامتوقف كرده واز چرخه وسير بيماري جلوگيري كند وجنبه ي ديگر استفاده ي بهينه ومناسب ازميكروارگانيسم ها براي توليدموادغذايي وتبديل بهينه ي صنايع غذايي مثل تهيه ي پنير,ماست ياحتي نان وهم چنين توليد داروهاي پزشكي ودام پزشكي است.درواقع علم ميكروبيولوژي درموردچگونگي استفاده ي بهينه از ميكروارگانيسم ها وجلوگيري ازضررها وزيان هايي كه ميكروارگانيسم ها مي توانند به حيات انسان ها ,دام ها و گياهان وارد كنند بحث مي كند.

ميكروبيولوژي يا زيست شناسي سلولي ومولكولي

گاه مي شنويم كه ازرشته ي ميكروبيولوژي باعنوان زيست شناسي سلولي و مولكولي ياد مي شود .تعدادي از داوطلبان آزمون سراسري تصور مي كنند كه رشته ي ميكروبيولوژي همان رشته ي علوم سلولي ومولكولي است ودر نتيجه هنگام انتخاب رشته با مشكلاتي روبه رومي شوند .درحقيقت علم ميكروبيولوژي مادرعلوم سلولي و مولكولي است.زماني كه راجع به فيزيولوژي سلول(چگونگي كاركردن و سوخت وسازسلول) صحبت مي شود، درواقع ساختارسلول به عنوان يك ميكروارگانيسم موردبررسي قرارمي گيرد ،اما اين باعث نمي شود كه دورشته ي بالارا يكي بدانيم،چون علوم سلولي ومولكولي از حيطه ي فعاليت هاي بيروني ميكروب خارج شده و وارد فعاليت هاي دروني آن مي شود،در حالي كه در علم ميكروبيولوژي تاثيرات بيروني ميكروارگانيسم ها مطالعه مي شوند .

براي مثال شما درعلم ميكروبيولوژي نگاه مي كنيد كه ميكروارگانيسم هاي مورد نظر شما چه نوع بيماري ايجاد كرده واز روي آثار بيماري حدس مي زنيد ميكروارگانيسمي راكه بررسي مي كنيد ،چه نوع ميكروبي است.با توجه به اينكه امروزه علوم،بسيار ريز ،جزئي و تخصصي شده است ،بهتر است كه دو علم ميكروبيولوژي و علوم سلولي و مولكولي دركنار يك ديگر و با نام تخصصي خود به علم زيست شناسي خدمت كنند نه اينكه يك علم ،ديگري را احاطه كند.اگر بخواهيم ميكروبيولوژي را زير مجموعه اي از علوم سلولي و مولكولي بدانيم ،اشتباه است چون گاهي علوم سلولي كاري به ميكروارگانيسم ها ندارد ودر مورد سلول هاي يوكاريوتي يا سلول هاي انساني صحبت مي كند .

باتوجه به اين كه امروزه دنيا با خطر شيوع مجدد يبماري هاي ميكروبي قديمي و شيوع بيماري هاي جديدروبه رواست ،رشته ي ميكروبيولوژي درتشخيص بيماري ها اهميت بسيار زيادي دارد.هم چنين رشته ي ميكروبيولوژي در پيش گيري و جلوگيري از بيماري ها كاربرد دارد ،مثل علم واكسينه لوژي كه علم جديدي است و وظيفه ي آن ساخت واكسن ها و سرم هاي مختلف است .

توانمندي هاو ويژگي هاي لازم

صبرو حوصله وعشق وعلاقه دو نكته ي اساسي براي موفقيت دررشته ي ميكروبيولوژي است كه تمام استادان و دانشجويان اين رشته به آن اشاره مي كنند،زيرا تحقيق در آزمايشگاه هاي ميكروبيولوژي و كشت دادن يك ميكروب نيازمند صبرو حوصله است وتحقيق ذرمورد بيماري هاي ميكروبي ومبارزه با آنها عشق وعلاقه ي فراوان مي طلبد .

علاوه برنكات ذكر شده دانشجوي اين رشته بايد از دو توانايي مهم نيز برخوردار باشد،يكي­حافظه اي قوي است،چون بيش تر مطالب اين رشته تئوري است ودوم قدرت تجزيه وتحليل است،زيرا اگر دانشجويي نتواند از اطلاعاتي كه در حافظه اش جمع كرده است ،بهره برداري مناسب كرده وتحليل مناسبي داشته باشد،مثل يك كامپيوتر خاموش مي ماند كه هيچ استفاده اي از آن نمي شود .دانشجوي اين رشته بايد در درس زيست شناسي به خصوص دربخش هايي كه به علوم سلولي ومولكولي مي پردازد ودرس شيمي قوي و توانا باشد

فرصت هاي شغلي

ميكروبيولوژي پايه واساس بسياري ازعلوم از قبيل : بيوشيمي ،بيوتكنولوژي،ژنتيك وپزشكي است .براي مثال يكي از پايه هاي مستحكمي كه پزشكي برآن استوار است ،ميكروب شناسي است،چون علم ميكروب شناسي است كه توانسته در مقابل حمله هاي سهمگين بيماري هاي بسيار خطرناك وجهان گير مانند فلج اطفال يا طاعون با تشخيص،درمان يا تهيه ي واكسن راه هاي اساسي و موثري دراختيار بشرقرار مي دهد وباز علم ميكروب شناسي است كه بايد راهي براي نجات انسان از چنگال بيماري هاي عفوني جديد پيدا كند .يكي از كاربردهاي رشته ي ميكروبيولوژي حداقل در بعد سنتي،تشخيص بيماري است،چون در آزمايشگا ه هاي تشخيص طبي،محققان عمدتا با بيماري هاي عفوني ميكروارگانيسم ها سروكار دارند،يعني يا به طور مستقيم به تشخيص ميكروارگانيسم ها يا به تشخيص آثارحياتي آنها مي پردازند كه نهايتا اين آثار حياتي ما را به سوي يك ميكروارگانيسم هدايت مي كند.مثل ترشح­ يك آنزيم يا تبديل قند به اسيد كه دراين مورد ،ما خود ميكروارگانيسم را نمي بينيم اما از آثار حياتي آن مي توانيم تشخيص دهيم كه با چه ميكروارگانيسمي سروكار داريم واين ميكروارگانيسم چه بيماري را ايجاد كرده است.
https://www.facebook.com/Doctor-M-bashir-safi-1492611301017643/

12/02/2025
02/09/2024

Bacillus CereusHabitat of Bacillus cereus: 1. Bacillus cereus is isolated from soil, vegetables, milk, cereals, spices, ...
02/09/2024

Bacillus Cereus

Habitat of Bacillus cereus:
1. Bacillus cereus is isolated from soil, vegetables, milk, cereals, spices, fried rice, cooked poultry and meats, soups, and desserts.
2. It is also found in mashed potatoes, beef stew, apples, hot chocolates sold in vending machines, and other improper food handling areas.
3. In 1887, B. cereus was isolated from air in a cowshed by Frankland and Frankland.
4. It is a saprophytic species of Bacillus.
5. Vegetative cells and spores are widely distributed in nature.
6. It is opportunistic pathogens to immunocompromised patients and sometimes pathogens of man.
7. It is not considered as normal flora of humans but maybe transiently colonize skin or the gastrointestinal or respiratory tracts.
8. Endospores show much greater resistance to physical and chemical agents such as heat, cold, desiccation, radiation, disinfection, antibiotics, and other toxins.
9. It is able to grow either in the presence or in the absence of oxygen.
10. It interacts with other microorganisms in the rhizosphere, the region surrounding plant roots.

Morphology of Bacillus cereus:
1. Bacillus cereus is gram-positive rod-shaped bacilli with square ends.
2. Occasionally may appear gram variable or even gram-negative with age.
3. They are single rod-shaped or appear in short chains.
4. Clear cut junctions between the members of chains are easily visible.
5. Tissue section staining may appear long and filamentous.
6. They are straight or slightly curved.
7. They are non-capsulated.
8. It contains spores with central spores.
9. Spores are oval (ellipsoidal) and not swelling the mother cell, and not formed in the animal’s blood and tissues or in aerobic culture.
10. It is 1×3-4 µm in size.
11. It is motile and flagellated with peritrichous flagella.
12. It is motile by two types of motility, swimming and swarming.
13. Endospores are able to survive long periods of exposure to air and other adverse environmental conditions.
14. It is a beta-hemolytic bacterium that causes foodborne disease.
15. Its virulence factors include cerolysin and phospholipase.

Clinical manifestation of Bacillus cereus:
A. Food poisoning: Two forms of food poisoning: vomiting disease (emetic form) and diarrheal disease (diarrheal form).
1. Emetic form
The emetic form of the disease results from the consumption of contaminated rice. Most bacteria are killed during the initial cooking of the rice, but the heat-resistant spores survive. If the cooked rice is not refrigerated, the spores germinate, and the bacteria can multiply rapidly. The heat-stable enterotoxin that is released is not destroyed when the rice is reheated. The emetic form of the disease is an intoxication, caused by the ingestion of the enterotoxin and not the bacteria. Thus the incubation period after eating the contaminated rice is short (1 to 6 hours), and the duration of illness is also short (less than 24 hours). Symptoms consist of vomiting, nausea, and abdominal cramps. Fever and diarrhea are generally absent.
2. Diarrheal form
The diarrheal form of B. cereus food poisoning is a true infection, resulting from the ingestion of the bacteria in contaminated meat, vegetables, or sauces. There is a long incubation period, during which the organism multiplies in the patient’s intestinal tract, and the release of the heat-labile enterotoxin follows. This enterotoxin is responsible for the profuse watery diarrhea, nausea, and abdominal cramps.
Eye infections
1. B. cereus ocular infections usually occur after traumatic, penetrating injuries of the eye with a soil contaminated object.
2. These include severe keratitis and endophthalmitis.

C. Other infections
1. B. cereus has also been associated with localized infections, such as wound infections, and with systemic infections, including endocarditis, catheter-associated bacteremia, central nervous system infections, osteomyelitis, and pneumonia.
2. The presence of a medical device or intravenous drug use predisposes to these infections.

Genome Structure:
1. The circular chromosome with 5,411,809 nt in length.
2. It contains 5481 genes, 5234 proteins coding, 147 structural RNA, and 5366 RNA operons.
3. The plasmid is 5 to 500 kb in size.

Cultural Characteristics of Bacillus cereus:
1. Most Bacillus spp grow readily on nutrient agar or peptone media.
2. The optimum temperature for growth varies from 20°C to 40°C, mostly 37°C.
3. B. cereus is mesophilic and is capable of adapting to a wide range of environmental conditions.
4. On Nutrient Agar at 37°C, it forms large (2-5 mm) grey-white, granular colonies with a less wavy edge and less membranous consistency.
5. On 5% sheep blood agar at 37°C, B. cereus colonies are large, feathery, dull, gray, granular, spreading colonies, and opaque with a rough matted surface and irregular perimeters.
6. On blood agar, it is beta-hemolytic.
7. Colony perimeters are irregular and represent the configuration of swarming from the site of initial inoculation, perhaps due to B. cereus swarming motility.
8. In some instances, smooth colonies develop either alone or in the midst of rough colonies.
9. When grown apart from the initial inoculum, smooth colonies are surrounded by a uniform zone of beta-hemolysis framing the centrally situated colony.
10. The MYP agar has been the standard media for plating B. cereus, but it has little selectivity so background flora is not inhibited and can mask the presence of B. cereus. B. cereus colonies are usually lecithinase-positive and mannitol-negative on MYP agar.
11. Bacara is a chromogenic selective and differential agar that promotes the growth and identification of B. cereus but inhibits the growth of background flora. Bacillus cereus colonies turn pink-orange with an opaque halo.
12. The chromogenic agar has been suggested for the enumeration of the B. cereus group as a substitute for MYP. Typical colonies will grow as pink-orange uniform colonies surrounded by a zone of precipitation.

Laboratory Diagnosis of Bacillus cereus:
SPECIMENS: Faeces, vomitus, remaining food (if any), eye specimen (corneal swab)

DIRECT DETECTION METHODS:
1. Microscopically the organisms appear as large gram-positive rods in singles, pairs, or serpentine with square ends after Gram staining.
2. Endospores formation are seen as an unstained oval or round region within the center of the cell. Spores are oval (ellipsoidal) and not swelling of the mother cell.

CULTURE:

1. Growth on 5% sheep blood agar, chocolate agar, routine blood culture media, and nutrient broths.
2. Detectable growth within 24 hours following incubation on media incubated at 35° C, in ambient air, or in 5% carbon dioxide (CO2).
3. Colony character on blood agar: Large, feathery, spreading, dull, gray, granular, spreading colonies and opaque with a rough matted surface and irregular perimeters, beta-hemolytic.
4. Bacillus cereus can be isolated from f***s by using selective media such as MYPA (mannitol, egg yolk, polymyxin, phenol red, and agar), PEMBA (polymyxin, egg yolk, mannitol, bromothymol, blue agar).
5. These media take advantage of the phospholipase C positive reaction on egg yolk agar, no production of acid from mannitol, and incorporation of pyruvate or polymyxin as the selective agents.

BIOCHEMICAL ANALYSIS:

1. Catalase: positive
2. Oxidase: negative
3. OF test: fermentative
4. Indole: negative
5. Methyl red: positive
6. Vogues proskauer: positive
7. Glucose: fermentative, production of acid
8. Sucrose: fermentative, production of acid
9. Lactose: no fermentation
10. Starch hydrolysis: positive
11. Nitrate reduction: positive
12. Gelatin hydrolysis: positive
13. Spore staining: endospore-forming bacteria
14. Motility: motile

SERODIAGNOSIS :

1. Serologic methods are available for the detection of B. cereus toxin in food and f***s.
2. Microslide gel diffusion test is generally used as a toxin detection system.
MOLECULAR METHOD:

The toxigenic potential of B. cereus isolates, genes encoding emetic-toxin cereulide (ces), and enterotoxins (nhe, hbl and cytK) can be analyzed by multiplex PCR.

Treatment of Bacillus cereus:
1. Persons with B. cereus food poisoning require only supportive treatment.
2. Oral rehydration or, occasionally, intravenous fluid and electrolyte replacement for patients with severe dehydration is indicated. Antibiotics are not indicated.
3. Patients with the invasive disease require antibiotic therapy. Bacillus cereus is susceptible to clindamycin, erythromycin, vancomycin, aminoglycosides, and tetracycline. It is resistant to penicillin and trimethoprim.

Prevention and Control of Bacillus cereus:
1. Diarrheal and vomiting intoxications by this organism are readily preventable by appropriate food-handling procedures.
2. Meat and vegetables should not be held at temperatures between 10 and 45 °C for long periods, and rice held overnight after cooking should be refrigerated and not held at room temperature.
3. Prevention of infection in patients following surgery or in those who are immunocompromised or who are otherwise predisposed to infection depends on good practice.

A collection of biochemical tests from an experiment. How many different biochemical tests do you think are here?
02/09/2024

A collection of biochemical tests from an experiment. How many different biochemical tests do you think are here?

Gram positive and gram negative bacteria 🦠
02/09/2024

Gram positive and gram negative bacteria 🦠

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