Dr Emmyoung

Dr Emmyoung Nyong Emmanuel
Medical Tutor
About Me
Dedicated and passionate medical tutor with [8year] years of experience in teaching and mentoring students.

Proven track record of helping students achieve academic success and develop clinical skills.

21/11/2025
19/11/2025

Rabies virus, a member of the genus Lyssavirus within the Rhabdoviridae family, is characterized by its bullet-shaped morphology and a single-stranded, negative-sense RNA genome. Here is an overview of the microbiology of the rabies virus:

Structure:
- Genome: It comprises approximately 12,000 nucleotides and encodes five structural proteins: nucleoprotein (N), phosphoprotein (P), matrix protein (M), glycoprotein (G), and RNA polymerase (L).
- Envelope: The virus is enveloped, with the surface of the envelope containing glycoprotein spikes that play a critical role in viral entry into host cells.
- Antigenicity: The glycoprotein G is responsible for inducing neutralizing antibodies and is crucial for vaccine development.

Virology:
- Receptors and Entry: Rabies virus attaches to nicotinic acetylcholine receptors on muscle cells at the site of inoculation. Other receptors facilitating entry into neurons may exist, as neurons do not express the acetylcholine receptors.
- Pathogenesis: The virus exhibits neurotropism, meaning it specifically targets nerve tissues. Following entry, it travels retrogradely along peripheral nerves towards the central nervous system (CNS) and eventually disseminates centrifugally via somatic and autonomic nerves.

Molecular Genetics:
- Diversity: While the classical rabies virus is the most common cause of human cases, several Lyssavirus species can cause rabies-like illnesses, identifiable through molecular genetic techniques.
- Evolution and Variants: Different variants of the virus are named after their primary animal reservoir. Molecular techniques, such as sequencing the gene encoding the inner nucleoprotein, help identify the specific Lyssavirus and its vector of transmission.

Mechanisms of Disease:
- Infection and Spread: After a bite, the virus amplifies near the site of inoculation and enters local motor and sensory nerves. It then travels centrally in a retrograde manner to infect the CNS, initially the diencephalon, hippocampus, and brainstem.
- Pathological Findings: Infection can result in mild cerebral edema and vascular congestion. Key microscopic changes include perivascular cuffing, microglial activation, and the presence of Negri bodies—intracytoplasmic inclusions in neurons.

Host Interaction:
- Susceptibility: Factors affecting susceptibility include the type and location of exposure, genetic factors, and innate immunity. Some species are more resistant, while others like foxes and wolves are highly susceptible.

Understanding of the rabies virus microbiology is fundamental for developing diagnostic tools, therapeutics, and effective vaccinations. Its persistent occurrence underscores the importance of surveillance and control measures in both human and veterinary public health contexts.

16/11/2025

Liver Cirrhosis lecture notes by Nyong Emmanuel PHSI

Cirrhosis of the liver is an advanced stage of liver fibrosis that is typically the result of chronic liver disease. It is characterized by the replacement of normal liver tissue with scar tissue, which eventually leads to loss of liver function. Here are the key aspects of liver cirrhosis:

Etiology
Cirrhosis can result from a variety of chronic liver conditions, including:
- Chronic alcohol abuse (alcoholic liver disease)
- Chronic viral hepatitis (hepatitis B, C, and D)
- Nonalcoholic fatty liver disease (NAFLD) and nonalcoholic steatohepatitis (NASH)
- Autoimmune hepatitis
- Genetic disorders (e.g., hemochromatosis, Wilson's disease)
- Primary biliary cholangitis and primary sclerosing cholangitis

Pathophysiology
- Chronic liver damage leads to inflammation and fibrosis.
- Progressive scarring impairs blood flow through the liver, leading to portal hypertension and liver dysfunction.
- The liver's ability to perform its detoxifying, synthetic, and metabolic roles diminishes.

Clinical Manifestations
Symptoms may be absent in the early stages but typically include:
- Fatigue and weakness
- Jaundice (yellowing of the skin and eyes)
- Pruritus (itching)
- Ascites (accumulation of fluid in the abdomen)
- Edema (swelling of the legs)
- Easy bruising or bleeding
- Hepatic encephalopathy (confusion and altered level of consciousness due to buildup of toxins)

Complications
- Portal Hypertension: May lead to esophageal varices and gastrointestinal bleeding.
- Ascites: Increases the risk for spontaneous bacterial peritonitis.
- Hepatic Encephalopathy: Ranges from mild cognitive impairment to coma.
- Hepatorenal Syndrome: Renal failure associated with severe liver disease.
- Increased risk of Hepatocellular Carcinoma: Due to ongoing liver damage.

Diagnosis
- Clinical Evaluation: Based on history and physical examination.
- Laboratory Tests: Liver function tests, serum albumin, coagulation studies, complete blood count.
- Imaging Studies: Ultrasound, CT, or MRI to assess liver structure and complications.
- Liver Biopsy: Can confirm the diagnosis and cause of cirrhosis.

Management
- Address the Underlying Cause: This may involve antiviral treatments for hepatitis, lifestyle modification for alcohol dependence, or weight management for NAFLD/NASH.
- Medical Management: Diuretics for ascites, beta-blockers for portal hypertension, and lactulose for hepatic encephalopathy.
- Surveillance: Regular monitoring for hepatocellular carcinoma.
- Liver Transplantation: Considered in cases of decompensated cirrhosis or liver failure.

Prognosis
The prognosis depends on the cause and stage of cirrhosis. Complications can lead to significant morbidity and mortality. Early detection and addressing the underlying cause can slow progression and improve outcomes.

Nursing Diagnoses:
1. Imbalanced Nutrition, Less than Body Requirements
- Related to: Increased energy and protein needs, poor intake, malabsorption.
- As evidenced by: Weight loss, muscle wasting, decreased albumin levels, anemia.

2. Fluid Volume Excess
- Related to: Portal hypertension, hypoalbuminemia, and sodium retention.
- As evidenced by: Presence of ascites, peripheral edema, weight gain, dyspnea.

3. Risk for Bleeding
- Related to: Coagulopathy due to impaired liver synthesis of clotting factors, portal hypertension.
- As evidenced by: Prolonged prothrombin time, INR elevation, thrombocytopenia, presence of varices.

4. Impaired Skin Integrity
- Related to: Jaundice, pruritus, edema, and poor nutritional status.
- As evidenced by: Skin breakdown, excoriations, jaundice, spider angiomata.

5. Confusion (Acute or Chronic) / Risk for Injury
- Related to: Hepatic encephalopathy, elevated ammonia levels.
- As evidenced by: Confusion, altered mental status, asterixis, agitation.

Nursing Interventions:

1. Nutritional Support
- Engage a dietitian to provide a comprehensive dietary plan that includes sufficient calories and protein intake.
- Implement small, frequent meals that are high in calories and protein.
- Monitor weight and laboratory values like albumin and prealbumin to assess nutritional status.

2. Fluid and Electrolyte Management
- Monitor intake and output, and weigh the patient daily.
- Administer diuretics as prescribed and educate about sodium restriction, if applicable.
- Assess for signs of fluid overload, including dyspnea and elevated jugular venous pressure.

3. Monitoring and Preventing Bleeding
- Conduct regular assessment for signs of bleeding such as hematemesis, melena, or petechiae.
- Maintain lab monitoring for coagulation profiles and platelet counts.
- Prepare for potential blood transfusions and vitamin K administration if indicated.

4. Skin Care
- Implement skin care protocols to manage itching, using emollients and antihistamines as needed.
- Provide gentle skincare techniques during hygiene routines to prevent skin breakdown.
- Use supportive mattresses and reposition the patient regularly to prevent pressure ulcers.

5. Managing Hepatic Encephalopathy
- Monitor mental status regularly using scales such as the Glasgow Coma Scale.
- Administer medications as prescribed, such as lactulose, to help reduce ammonia levels.
- Educate the family on the importance of recognizing early signs of encephalopathy.

6. Patient Education and Support
- Educate patients and their families about the nature of cirrhosis, potential complications, and the importance of adhering to treatment plans and dietary recommendations.
- Encourage participation in support groups or counseling to aid in coping with the chronic nature of liver diseases

09/11/2025

Among adults aged 20 to 50 years, UTIs are much more common in women than in men (1, 2). In women in this age group, most UTIs are cystitis or pyelonephritis. In men of the same age, most UTIs are urethritis or prostatitis. The incidence of UTI increases in patients > 50 years, but the female:male ratio decreases because of the increasing frequency of prostate enlargement and instrumentation in me

Pathophysiology of Bacterial UTIs
The urinary tract, from the kidneys to the urethral meatus, is normally sterile and resistant to bacterial colonization despite frequent contamination of the distal urethra with colonic bacteria. The major defense against urinary tract infection (UTI) is complete emptying of the bladder during urination. Other mechanisms that maintain the tract’s sterility include urine acidity, the vesicoureteral valve, and various immunologic and mucosal barriers.

About 95% of UTIs occur when bacteria ascend the urethra to the bladder and, in the case of pyelonephritis, ascend the ureter to the kidney. The remainder of UTIs are hematogenous. Systemic infection can result from UTI, particularly in older patients. Urinary tract infections are a common cause of hospital-acquired bacteremia (1).

Uncomplicated UTI is usually considered to be cystitis or pyelonephritis that occurs in premenopausal adult women with no structural or functional abnormality of the urinary tract and who are not pregnant and have no significant comorbidity that could lead to more serious outcomes. Also, some experts consider UTIs to be uncomplicated even if they affect postmenopausal women or patients with well-controlled diabetes. In men, most UTIs occur in children or older patients, are due to anatomic abnormalities or instrumentation, and are considered complicated.

The rare UTIs that occur in men aged 15 to 50 years are usually in men who have unprotected a**l in*******se or in those who have an uncircumcised p***s, and they are generally considered uncomplicated. UTIs in men this age who do not have unprotected a**l in*******se or an uncircumcised p***s are very rare and, although also considered uncomplicated, warrant evaluation for urologic abnormalities.

Complicated UTI can involve either s*x at any age. It is usually considered to be pyelonephritis or cystitis that does not fulfill criteria to be considered uncomplicated. A UTI is considered complicated if the patient is a child, is pregnant, or has any of the following:

A structural or functional urinary tract abnormality and obstruction of urine flow

A comorbidity that increases risk of acquiring infection or resistance to treatment, such as poorly controlled diabetes, chronic kidney disease, or immunocompromise

Recent instrumentation or surgery of the urinary tract

Risk factors
Risk factors for development of UTI in women include the following:

Sexual in*******se

Diaphragm and spermicide use

Antibiotic use

New s*x partner within the past year

History of UTIs in first-degree female relatives

History of recurrent UTIs

First UTI at early age

Risk factors for UTI in males include the following:

Benign prostatic hyperplasia with obstruction, common in men over 50 years

Any other cause of obstruction of the urinary tract (eg, prostate cancer, urethral stricture)

Recent instrumentation or indwelling catheters

Structural abnormalities, such as bladder diverticula

Neurologic conditions that interfere with normal voiding (eg, spinal cord injury)

Cognitive impairment, f***l incontinence or urinary incontinence

Even use of spermicide-coated condoms increases risk of UTI in women. The increased risk of UTI in women using antibiotics or spermicides probably occurs because of alterations in vaginal flora that allow overgrowth of Escherichia coli. In older women, soiling of the perineum due to f***l incontinence increases risk.

Anatomic, structural, and functional abnormalities are risk factors for UTI. A common consequence of anatomic abnormality is vesicoureteral reflux (VUR), which is present in 30 to 45% of young children with symptomatic UTI. VUR is usually caused by a congenital defect that results in incompetence of the ureterovesical valve. VUR can also be acquired in patients with a flaccid bladder due to spinal cord injury or after urinary tract surgery. Other anatomic abnormalities predisposing to UTI include urethral valves (a congenital obstructive abnormality), delayed bladder neck maturation, bladder diverticulum, and urethral duplications (see Overview of Congenital Genitourinary Anomalies).

Structural and functional urinary tract abnormalities that predispose to UTI usually involve obstruction of urine flow and poor bladder emptying. Urine flow can be compromised by calculi and tumors. Bladder emptying can be impaired by neurogenic dysfunction, pregnancy, uterine prolapse, cystocele, and prostatic enlargement. UTI caused by congenital factors manifests most commonly during childhood. Most other risk factors are more common in older patients.

Other risk factors for UTI include instrumentation (eg, bladder catheterization, stent placement, cystoscopy) and recent surgery.

Pathophysiology reference
1. Weinstein MP, Towns ML, Quartey SM, et al: The clinical significance of positive blood cultures in the 1990s: A prospective comprehensive evaluation of the microbiology, epidemiology, and outcome of bacteremia and fungemia in adults. Clin Infect Dis 24(4):584-602, 1997. doi: 10.1093/clind/24.4.584

Etiology of Bacterial UTIs
The bacteria that most often cause cystitis and pyelonephritis are the following:

Enteric, usually gram-negative aerobic bacteria (most often)

Gram-positive bacteria (less often)

In normal genitourinary tracts, strains of Escherichia coli with specific attachment factors for transitional epithelium of the bladder and ureters account for 75 to 95% of cases. The remaining gram-negative urinary pathogens are usually other enterobacteria, typically Klebsiella or Proteus mirabilis, and occasionally Pseudomonas aeruginosa. Among gram-positive bacteria, Staphylococcus saprophyticus is isolated in 5 to 10% of bacterial UTIs. Less common gram-positive bacterial isolates are Enterococcus faecalis (group D streptococci) and Streptococcus agalactiae (group B streptococci), which may be contaminants, particularly if they were isolated from patients with uncomplicated cystitis.

In hospitalized patients, E. coli accounts for about 50% of cases. The gram-negative species Klebsiella, Proteus, Enterobacter, Pseudomonas, and Serratia account for about 40%, and the gram-positive bacterial cocci E. faecalis, S. saprophyticus, and Staphylococcus aureus account for the remainder.

Classification of Bacterial UTIs
Urethritis
Infection of the urethra with bacteria (or with protozoa, viruses, or fungi) occurs when organisms that gain access to it acutely or chronically colonize the numerous periurethral glands in the bulbous and pendulous portions of the male urethra and in the entire female urethra. The s*xually transmitted pathogens Chlamydia trachomatis (see Chlamydial, Mycoplasmal, and Ureaplasmal Infections), Neisseria gonorrhoeae (see Gonorrhea), Trichomonas vaginalis (see Trichomoniasis), and herpes simplex virus are common causes in both s*xes.

Cystitis
Cystitis is infection of the bladder. It is common in women, in whom cases of uncomplicated cystitis are usually preceded by s*xual in*******se (honeymoon cystitis). In men, bacterial infection of the bladder is usually complicated and usually results from ascending infection from the urethra or prostate or is secondary to urethral instrumentation. The most common cause of recurrent cystitis in men is chronic bacterial prostatitis.

Acute urethral syndrome
Acute urethral syndrome, which occurs in women, is a syndrome involving dysuria, frequency, and pyuria (dysuria-pyuria syndrome), which thus resembles cystitis. However, in acute urethral syndrome (unlike in cystitis), routine urine cultures are either negative or show colony counts that are lower than the traditional criteria for diagnosis of bacterial cystitis. Urethritis due to organisms including Chlamydia trachomatis and Ureaplasma urealyticum, which are not detected on routine urine culture, are a possible cause of acute urethral syndrome.

Noninfectious causes have been proposed, but supporting evidence is not conclusive, and most noninfectious causes usually cause little or no pyuria. Possible noninfectious causes include anatomic abnormalities (eg, urethral stenosis), physiologic abnormalities (eg, pelvic floor muscle dysfunction), hormonal imbalances (eg, atrophic urethritis), localized trauma, gastrointestinal system symptoms, and inflammation.

Asymptomatic bacteriuria
Asymptomatic bacteriuria is absence of UTI signs or symptoms in a patient whose urine culture satisfies criteria for UTI. Pyuria may or may not be present. Because it is asymptomatic, such bacteriuria is found mainly when high-risk patients are screened or when urine culture is done for other reasons.

Screening patients for asymptomatic bacteriuria is indicated for those at risk of complications if the bacteriuria is untreated (see the U.S. Preventive Services Task Force Reaffirmation Recommendation Statement, 2019). Such patients include

Pregnant women at 12 to 16 weeks' gestation or at the first prenatal visit, if later (because of the risk of symptomatic UTI, including pyelonephritis, during pregnancy; and adverse pregnancy outcomes, including low-birth-weight neonate and preterm delivery)

Patients who have had a kidney transplant within the previous 6 months

Young children with gross vesicoureteral reflux (VUR)

Before certain invasive genitourinary procedures that can cause mucosal bleeding (eg, transurethral resection of the prostate)

Certain patients (eg, postmenopausal women; patients with controlled diabetes; patients with ongoing use of urinary tract foreign objects such as stents, nephrostomy tubes, and indwelling catheters) often have persistent asymptomatic bacteriuria and sometimes pyuria. If they are asymptomatic, these patients should not be screened routinely, because they are at low risk. In patients with indwelling catheters, treatment of asymptomatic bacteriuria often fails to clear the bacteriuria and only leads to development of antibiotic-resistant organisms.

Acute pyelonephritis
Pyelonephritis is bacterial infection of the kidney parenchyma. The term should not be used to describe tubulointerstitial nephropathy unless infection is documented. In women, pyelonephritis is a common cause of community-acquired bacteremias (1). Pyelonephritis is uncommon in men with a normal urinary tract.

In 95% of cases of pyelonephritis, the cause is ascension of bacteria through the urinary tract. Although obstruction (eg, strictures, calculi, tumors, neurogenic bladder, VUR) predisposes to pyelonephritis, most women with pyelonephritis have no demonstrable functional or anatomic defects. In men, pyelonephritis is always due to some functional or anatomic defect. Cystitis alone or anatomic defects may cause reflux. The risk of bacterial ascension is greatly enhanced when ureteral peristalsis is inhibited (eg, during pregnancy, by obstruction, by endotoxins of gram-negative bacteria). Pyelonephritis is common in young girls and in pregnant women after bladder catheterization.

Pyelonephritis not caused by bacterial ascension is caused by hematogenous spread, which is particularly characteristic of virulent organisms such as S. aureus, P. aeruginosa, Salmonella species, and Candida species.

The affected kidney is usually enlarged because of inflammatory polymorphonuclear neutrophils and edema. Infection is focal and patchy, beginning in the pelvis and medulla and extending into the cortex as an enlarging wedge. Cells mediating chronic inflammation appear within a few days, and medullary and subcortical abscesses may develop. Normal parenchymal tissue between foci of infection is common.

Papillary necrosis may occur in acute pyelonephritis associated with diabetes, obstruction, sickle cell disease, pyelonephritis in renal transplants, pyelonephritis due to candidiasis, or a**lgesic nephropathy.

Although acute pyelonephritis is frequently associated with renal scarring in children, similar scarring in adults is not detectable in the absence of reflux or obstruction.

Classification referenc
Symptoms and Signs of Bacterial UTIs
Older patients and patients with a neurogenic bladder or an indwelling catheter may present with sepsis and delirium but without symptoms referable to the urinary tract.

When symptoms are present, they may not correlate with the location of the infection within the urinary tract because there is considerable overlap; however, some generalizations are useful.

In urethritis, the main symptoms are dysuria and, primarily in men, urethral discharge. Discharge can be purulent, whitish, or mucoid. Characteristics of the discharge, such as the amount of purulence, do not reliably differentiate gonococcal from nongonococcal urethritis.

Cystitis onset is usually sudden, typically with frequency, urgency, and burning or painful voiding of small volumes of urine. Nocturia, with suprapubic pain and often low back pain, is common. The urine is often turbid, and microscopic (or rarely gross) hematuria can occur. A low-grade fever may develop. Pneumaturia (passage of air in the urine) can occur when infection results from a vesicoenteric or vesicovaginal fistula or from emphysematous cystitis.

In acute pyelonephritis, symptoms may be the same as those of cystitis. One third of patients have urinary frequency and dysuria. However, with pyelonephritis, symptoms typically include chills, fever, flank pain, colicky abdominal pain, nausea, and vomiting. If abdominal rigidity is absent or slight, a tender, enlarged kidney is sometimes palpable. Costovertebral angle percussion tenderness is generally present on the infected side. In urinary tract infection in children, symptoms often are meager and less characteristic.

Diagnosis of Bacterial UTIs
Urinalysis

Sometimes urine culture

Diagnosis by culture is not always necessary. If done, diagnosis by culture requires demonstration of significant bacteriuria in properly collected urine.

Urine collection
If a s*xually transmitted infection (STI) is suspected, a urethral swab for STI testing is obtained prior to voiding. Urine collection is then by clean-catch or catheterization.

To obtain a clean-catch, midstream specimen, the urethral opening is washed with a mild, nonfoaming disinfectant and air dried. Contact of the urinary stream with the mucosa should be minimized by spreading the l***a in women and by pulling back the fo****in in uncircumcised men. The first 5 mL of urine is not captured; the next 5 to 10 mL is collected in a sterile container.

A specimen obtained by catheterization is preferable in older women (who typically have difficulty obtaining a clean-catch specimen) and in women with vaginal bleeding or discharge. Many clinicians also use catheterization to obtain a specimen if evaluation includes a pelvic examination. Diagnosis in patients with indwelling catheters is discussed elsewhere.

Testing, particularly culturing, should be done within 2 hours of specimen collection; if not, the sample should be refrigerated.

Urine testing
Microscopic examination of urine is useful but not definitive. Pyuria is defined as ≥ 8 white blood cells (WBCs)/mcL of uncentrifuged urine, which corresponds to 2 to 5 WBCs/high-power field in spun sediment. Most truly infected patients have > 10 WBCs/mcL. The presence of bacteria in the absence of pyuria, especially when several strains are found, is usually due to contamination during sampling. Microscopic hematuria occurs in up to 50% of patients, but gross hematuria is uncommon. WBC casts, which may require special stains to differentiate from renal tubular casts, indicate only an inflammatory reaction; they can be present in pyelonephritis, glomerulonephritis, and noninfective tubulointerstitial nephritis.

Pyuria in the absence of bacteriuria and of urinary tract infection (UTI) is possible, for example, if patients have nephrolithiasis, a uroepithelial tumor, appendicitis, or inflammatory bowel disease or if the sample is contaminated by vaginal WBCs. Women who have dysuria and pyuria without significant bacteriuria may have interstitial cystitis/bladder pain syndrome.

Dipstick tests also are commonly used. A positive nitrite test on a freshly voided specimen (bacterial replication in the container renders results unreliable if the specimen is not tested rapidly) is highly specific for UTI, but the test is not very sensitive. The leukocyte esterase test is very specific for the presence of > 10 WBCs/mcL and is fairly sensitive. In adult women with uncomplicated UTI with typical symptoms, most clinicians consider positive microscopic and dipstick tests sufficient; in these cases, given the likely pathogens, cultures are unlikely to change treatment but add significant expense.

Cultures are recommended in patients whose characteristics and symptoms suggest complicated UTI or an indication for treatment of bacteriuria. Common examples include the following:

Pregnant women

Postmenopausal women

Men

Prepubertal children

Patients with urinary tract abnormalities or recent instrumentation

Patients with immunosuppression or significant comorbidities

Patients whose symptoms suggest pyelonephritis or sepsis

Patients with recurrent UTIs (≥ 3/year)

Samples containing large numbers of epithelial cells are contaminated and unlikely to be helpful. An uncontaminated specimen must be obtained for culture. Culture of a morning specimen is most likely to detect UTI. Samples left at room temperature for > 2 hours can give falsely high colony counts due to continuing bacterial proliferation. Criteria for culture positivity include isolation of a single bacterial species from a midstream, clean-catch, or catheterized urine specimen.

For asymptomatic bacteriuria, criteria for culture positivity based on the guidelines of the Infectious Diseases Society of America (see Guidelines for the Diagnosis and Treatment of Asymptomatic Bacteriuria in Adults, 2019) are

Two consecutive clean-catch, voided specimens (for men, one specimen) from which the same bacterial strain is isolated in colony counts of >105/mL

Among women or men, in a catheter-obtained specimen, a single bacterial species is isolated in colony counts of > 102/mL

For symptomatic patients, culture criteria are

Uncomplicated cystitis in women: > 103/mL

Uncomplicated cystitis in women: > 102/mL (This quantification may be considered to improve sensitivity to E. coli.)

Acute, uncomplicated pyelonephritis in women: > 104/mL

Complicated UTI: > 105/mL in women; or > 104/mL in men or from a catheter-derived specimen in women

Acute urethral syndrome: > 102/mL of a single bacterial species

Any positive culture result, regardless of colony count, in a sample obtained via suprapubic bladder puncture should be considered a true positive.

In midstream urine, E. coli in mixed flora may be a true pathogen (1).

Occasionally, UTI is present despite lower colony counts, possibly because of prior antibiotic therapy, very dilute urine (specific gravity < 1.003), or obstruction to the flow of grossly infected urine. Repeating the culture improves the diagnostic accuracy of a positive result, ie, may differentiate between a contaminant and a true positive result. Newer molecular urine testing may sometimes reveal unusual pathogens in patients with refractory or recurrent UTI.

Infection localization
Clinical differentiation between upper and lower UTI is impossible in many patients, and testing is not usually advisable. When the patient has high fever, costovertebral angle tenderness, and gross pyuria with casts, pyelonephritis is highly likely. The best noninvasive technique for differentiating bladder from kidney infection appears to be the response to a short course of antibiotic therapy. If the urine has not cleared after 3 days of treatment, pyelonephritis should be sought.

Symptoms similar to those of cystitis and urethritis can occur in patients with vaginitis, which may cause dysuria due to the passage of urine across inflamed l***a. Vaginitis can often be distinguished by the presence of vaginal discharge, vaginal odor, and dyspareunia.

Men with symptoms of cystitis that do not respond to usual antimicrobial therapy may have prostatitis.

Other testing
Seriously ill patients require evaluation for sepsis, typically with complete blood count (CBC), electrolytes, lactate, blood urea nitrogen (BUN), creatinine, and blood cultures. Patients with abdominal pain or tenderness are evaluated for other causes of an acute abdomen.

Patients who have dysuria/pyuria but no bacteriuria should have testing for a s*xually transmitted infection (STI), typically using nucleic acid-based testing of swabs from the urethra and cervix (see Chlamydial Infections: Diagnosis).

Most adults do not require assessment for structural abnormalities unless the following occur:

The patient has ≥ 2 episodes of pyelonephritis.

Infections are complicated.

Nephrolithiasis is suspected.

There is painless gross hematuria or new renal insufficiency.

Fever persists for ≥ 72 hours.

Urinary tract imaging choices include ultrasonography, CT, and intravenous urography (IVU). Occasionally, voiding cystourethrography, retrograde urethrography, or cystoscopy is warranted. Urologic investigation is not routinely needed in women with symptomatic cystitis or asymptomatic recurrent cystitis, because findings do not influence therapy. Children with UTI often require imaging.

Diagnosis reference
1. Hooton TM, Roberts PL, Cox ME, et al: Voided midstream urine culture and acute cystitis in premenopausal women. N Engl J Med 369(20):1883-1891, 2013. doi: 10.1056/NEJMoa1302186

Treatment of Bacterial UTIs
Antibiotics

Occasionally surgery (eg, to drain abscesses, correct underlying structural abnormalities, or relieve obstruction)

All forms of symptomatic bacterial urinary tract infection (UTI) require antibiotics. For patients with troublesome dysuria, phenazopyridine may help control symptoms until the antibiotics do (usually within 48 hours).

Choice of antibiotic should be based on the patient’s allergy and adherence history, local resistance patterns (if known), antibiotic availability and cost, and patient and provider tolerance for risk of treatment failure. Propensity for inducing antibiotic resistance should also be considered. When urine culture is done, choice of antibiotic should be modified when culture and sensitivity results are available to the most narrow-spectrum drug effective against the identified pathogen.

Surgical correction is usually required for obstructive uropathy, anatomic abnormalities, and neuropathic urinary tract lesions such as compression of the spinal cord. Catheter drainage of an obstructed urinary tract aids in prompt control of UTI. Occasionally, a renal cortical abscess or perinephric abscess requires surgical drainage. Instrumentation of the lower urinary tract in the presence of infected urine should be deferred if possible. Sterilization of the urine before instrumentation and antibiotic therapy for 3 to 7 days after instrumentation can prevent life-threatening urosepsis.

Urethritis
Sexually active patients with symptoms are usually treated presumptively for s*xually transmitted infections (STIs) pending test results. A typical regimen is ceftriaxone 500 mg IM plus either azithromycin 2 g orally once or doxycycline 100 mg orally twice a day for 7 days. All s*x partners within 60 days should be evaluated. Men diagnosed with urethritis should be tested for HIV and syphilis in accordance with the Centers for Disease Control and Prevention's 2021 STI Treatment Guidelines.

Cystitis
First-line treatment of uncomplicated cystitis in patients who do not have risk factors for a multidrug-resistant gram-negative organism is nitrofurantoin 100 mg orally twice a day for 5 days (it is contraindicated if creatinine clearance is < 60 mL/min), trimethoprim/sulfamethoxazole (TMP/SMX) 160/800 mg orally twice a day for 3 days, or fosfomycin 3 g orally once. Less desirable choices include a fluoroquinolone or a beta-lactam antibiotic. If cystitis recurs within a week or two, a broader spectrum antibiotic (eg, a fluoroquinolone) can be used and the urine should be cultured.

Complicated cystitis should be treated with empiric broad-spectrum antibiotics chosen based on local pathogens and resistance patterns and adjusted based on culture results. Urinary tract abnormalities must also be managed.

Acute urethral syndrome
Treatment depends on clinical findings and urine culture results:

Women with dysuria, pyuria, and colony growth of > 102/mL of a single bacterial species on urine culture can be treated as for uncomplicated cystitis.

Women who have dysuria and pyuria with no bacteriuria should be evaluated for an STI (including for N. gonorrhoeae and C. trachomatis).

Women who have dysuria but neither pyuria nor bacteriuria do not have the true urethral syndrome. They should be evaluated for noninfectious causes of dysuria. Evaluation may include therapeutic trials, for example, of behavioral treatments (eg, biofeedback and pelvic musculature relaxation), surgery (for urethral stenosis), and medications (eg, hormone replacement for suspected atrophic urethritis, anesthetics, antispasmodics).

Asymptomatic bacteriuria
Typically, asymptomatic bacteriuria in patients with diabetes, older patients, or patients with chronically indwelling bladder catheters should not be treated. However, patients at risk of complications from asymptomatic bacteriuria (see Urinary Tract Infections (UTI): Screening) should have any treatable causes addressed and be given antibiotics as for cystitis. In pregnant women, only a few antibiotics can be safely used. Oral beta-lactams, sulfonamides, and nitrofurantoin are considered safe in early pregnancy, but trimethoprim should be avoided during the first trimester, and sulfamethoxazole should be avoided during the third trimester, particularly near parturition. Patients with untreatable obstructive problems (eg, calculi, reflux) may require long-term suppressive therapy.

Acute pyelonephritis
Antibiotics are required. Outpatient treatment with oral antibiotics is possible if all of the following criteria are satisfied:

Patients are expected to be adherent

Patients are immunocompetent

Patients have no nausea or vomiting or evidence of volume depletion or septicemia

Patients have no factors suggesting complicated UTI

Ciprofloxacin 500 mg orally twice a day for 7 days or levofloxacin 750 mg orally once a day for 5 to 7 days are first-line antibiotics if < 10% of the uropathogens in the community are resistant. A second option is usually TMP/SMX 160/800 mg orally twice a day for 14 days (1). However, local sensitivity patterns should be considered because in some parts of the United States, > 20% of E. coli are resistant to sulfa.

Patients not eligible for outpatient treatment should be hospitalized and given parenteral therapy selected on the basis of local sensitivity patterns. First-line antibiotics are usually renally excreted fluoroquinolones, such as ciprofloxacin and levofloxacin. Other choices, such as ampicillin plus gentamicin, the aminoglycoside plazomicin (2), broad-spectrum cephalosporins (eg, ceftriaxone, cefotaxime, cefepime), aztreonam, beta-lactam/beta-lactam inhibitor combinations (ampicillin/sulbactam, ticarcillin/clavulanate, piperacillin/tazobactam), and imipenem/cilastatin, are usually reserved for patients with more complicated pyelonephritis (eg, with obstruction, calculi, resistant bacteria, or a hospital-acquired infection) or recent urinary tract instrumentation.

Parenteral therapy is continued until defervescence and other signs of clinical improvement occur. In > 80% of patients, improvement occurs within 72 hours. Oral therapy can then begin, and the patient can be discharged for the remainder of a 7- to 14-day treatment course. Complicated cases require longer courses of IV antibiotics with total duration of 2 to 3 weeks and urologic correction of anatomic defects.

Outpatient management can be considered in pregnant women with pyelonephritis, but only if symptoms are mild, close follow-up is available, and (preferably) pregnancy is < 24 weeks' gestation. Outpatient treatment is with cephalosporins. Otherwise, first-line IV antibiotics include cephalosporins, aztreonam, or ampicillin plus gentamicin. If pyelonephritis is severe, possibilities include piperacillin/tazobactam or meropenem. Fluoroquinolones and TMP/SMX should be avoided. Because recurrence is common, some authorities recommend prophylaxis after the acute infection resolves with nitrofurantoin 100 mg orally or cephalexin 250 mg orally every night during the remainder of the pregnancy and for 4 to 6 weeks after pregnancy.

Treatment references
1. Gupta K, Hooton TM, Naber KG, et al: International clinical practice guidelines for the treatment of acute uncomplicated cystitis and pyelonephritis in women: A 2010 update by the Infectious Diseases Society of America and the European Society for Microbiology and Infectious Diseases. Clin Infect Dis52(5):e103-120, 2011. doi: 10.1093/cid/ciq257

2. Wagenlehner FME, Cloutier DJ, Komirenko AS, et al: Once-daily plazomicin for complicated urinary tract infections. N Engl J Med 380(8):729-740, 2019. doi: 10.1056/NEJMoa1801467

Prevention of Bacterial UTIs
In women with recurrent urinary tract infection (UTI), physical examination should include pelvic examination to detect manageable conditions, such as vulvovaginal atrophy, urethral diverticulum, f***l incontinence, and vaginal prolapse. Men with recurrent UTI should be evaluated for prostatitis, urethritis, and incomplete bladder emptying.

In women who experience ≥ 3 urinary tract infections (UTIs)/year, behavioral measures are recommended, including increasing fluid intake, avoiding spermicides and diaphragm use, not delaying urination, wiping front to back after defecation, avoiding douching, and urinating immediately after s*xual in*******se. If these techniques are unsuccessful, antibiotic prophylaxis should be considered. Common options are continuous and postcoital prophylaxis.

The use of cranberry products, in addition to other behavioral measures, may be considered another strategy to prevent recurrent cystitis. This approach is based on evidence suggesting that cranberry products may decrease the frequency of simple cystitis and in people who have undergone an intervention involving the bladder (1). However, further assessment is required in well-designed randomized controlled trials to further clarify who would benefit from cranberry products.

Continuous prophylaxis commonly begins with a 6-month trial. If UTI recurs after 6 months of prophylactic therapy, prophylaxis may be reinstituted for 2 or 3 years. Choice of antibiotic depends on susceptibility patterns of prior infections. Common options are trimethoprim/sulfamethoxazole 40/200 mg orally once a day or 3 times a week, nitrofurantoin 50 or 100 mg orally once a day, cephalexin 125 to 250 mg orally once a day, and fosfomycin 3 g orally every 10 days. Fluoroquinolones are effective but are not usually recommended because resistance is increasing. Also, fluoroquinolones are contraindicated in pregnant women and children. Nitrofurantoin is contraindicated if creatinine clearance is < 60 mL/min. Long-term use can rarely cause damage to the lungs, liver, and nervous system. Methenamine has been demonstrated to be efficacious in the prevention of UTI in older adults with CrCl > 30 ml/min (2).

Postcoital prophylaxis in women may be more effective if UTIs are temporally related to s*xual in*******se. Usually, a single dose of one of the antibiotics used for continuous prophylaxis (other than fosfomycin) is effective.

Contraception is recommended for women using a fluoroquinolone because these medications can potentially injure a fetus. Although concern exists that antibiotics may decrease the effectiveness of oral contraceptives, pharmacokinetic studies have not shown a significant or consistent effect. Nonetheless, some experts still recommend that women who use oral contraceptives use barrier contraceptives while they are taking antibiotics.

In pregnant women, effective prophylaxis of UTI is similar to that in nonpregnant women, including use of postcoital prophylaxis. Appropriate patients include those with acute pyelonephritis during a pregnancy, patients with > 1 episode (despite treatment) of UTI or bacteriuria during pregnancy, and patients who required prophylaxis for recurrent UTI before pregnancy.

In postmenopausal women, antibiotic prophylaxis is similar to that described previously. Additionally, topical estrogen therapy markedly reduces the incidence of recurrent UTI in women with atrophic vLk ki ii

Key Points
The most common causes of bacterial UTI and UTI overall are E. coli and other gram-negative enteric bacteria.

Do not test for or treat asymptomatic bacteriuria except in pregnant women, immunocompromised patients, or before an invasive urologic procedure.

In general, culture urine in suspected complicated UTI but not in uncomplicated cystitis.

Test patients for structural abnormalities 7if6 infections recur or are complicated, nephrolithiasis is suspected, there is painless hematuria or new renal insufficiency, or fever persists for ≥ 72 hours.

If available, consider local resistance patterns when choosing antibiotic therapy for UTI.

For women with ≥ 3 UTIs/year despite behavioral prophylactic measures, consider continuous or postcoital antibiotic prophylaxis.

Introduction to Urinary Tract Infections (UTIs)Catheter-Associated Urinary Tract Infections

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